IL_4WSD_374

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_374 not in the Motif Atlas

Homologous match to IL_5E81_371

Geometric discrepancy: 0.2571

The information below is about IL_5E81_371

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4WSD|1|3L|G|29
4WSD|1|3L|G|30
4WSD|1|3L|A|31
*
4WSD|1|3L|U|39
4WSD|1|3L|C|40
4WSD|1|3L|C|41

Current chains

Chain 3L

tRNA-Phe

Nearby chains

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 2A

30S ribosomal protein S11

Chain 62

30S ribosomal protein S7