IL_4WT1_235

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CCAGG*CCUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCAGG,CCUGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_235 not in the Motif Atlas

Geometric match to IL_4WF9_084

Geometric discrepancy: 0.3857

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4WT1|1|1G|C|984
4WT1|1|1G|C|985
4WT1|1|1G|A|986
4WT1|1|1G|G|987
4WT1|1|1G|G|988
*
4WT1|1|1G|C|1217
4WT1|1|1G|C|1218
4WT1|1|1G|U|1219
4WT1|1|1G|G|1220
4WT1|1|1G|G|1221

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 5A

30S ribosomal protein S14 type Z

Chain AA

30S ribosomal protein S19