IL_4WT8_012

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4WT8|1|Ab|U|240, 4WT8|1|Ab|C|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_012 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0748

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4WT8|1|Ab|C|238
4WT8|1|Ab|A|239
4WT8|1|Ab|U|240
4WT8|1|Ab|C|241
4WT8|1|Ab|A|242
4WT8|1|Ab|G|243
*
4WT8|1|Ab|C|273
4WT8|1|Ab|G|274
4WT8|1|Ab|A|275
4WT8|1|Ab|C|276
4WT8|1|Ab|G|277
4WT8|1|Ab|A|278
4WT8|1|Ab|C|279
4WT8|1|Ab|G|280

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AR

30S ribosomal protein S17