IL_4WT8_030

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4WT8|1|Ab|A|649

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_030 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1189

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4WT8|1|Ab|G|646
4WT8|1|Ab|A|647
4WT8|1|Ab|G|648
4WT8|1|Ab|A|649
4WT8|1|Ab|G|650
*
4WT8|1|Ab|U|724
4WT8|1|Ab|G|725
4WT8|1|Ab|G|726
4WT8|1|Ab|U|727

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain AF

30S ribosomal protein S6

Chain AO

30S ribosomal protein S15

Chain AS

30S ribosomal protein S18