IL_4WT8_033

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_033 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.0865

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4WT8|1|Ab|G|758
4WT8|1|Ab|G|759
4WT8|1|Ab|G|760
4WT8|1|Ab|A|761
4WT8|1|Ab|G|762
*
4WT8|1|Ab|U|788
4WT8|1|Ab|C|789

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain AK

30S ribosomal protein S11

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain CB

50S ribosomal protein L2