IL_4WT8_038

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4WT8|1|Ab|C|912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_038 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1818

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4WT8|1|Ab|G|911
4WT8|1|Ab|C|912
4WT8|1|Ab|A|913
*
4WT8|1|Ab|U|1363
4WT8|1|Ab|U|1364
4WT8|1|Ab|C|1365
4WT8|1|Ab|C|1366
4WT8|1|Ab|C|1367

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9

Chain C3

Transfer RNA; tRNA

Chain C4

Transfer RNA; tRNA