IL_4WT8_039

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_039 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.1256

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

4WT8|1|Ab|G|931
4WT8|1|Ab|G|932
*
4WT8|1|Ab|C|1208
4WT8|1|Ab|A|1209
4WT8|1|Ab|C|1210

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain AM

30S ribosomal protein S13

Chain AT

30S ribosomal protein S19

Chain C2

Transfer RNA; tRNA

Chain C4

Transfer RNA; tRNA