IL_4WT8_055

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_055 not in the Motif Atlas

Geometric match to IL_4ZC7_004

Geometric discrepancy: 0.1926

The information below is about IL_4ZC7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4WT8|1|Ab|G|1388
4WT8|1|Ab|U|1389
4WT8|1|Ab|C|1390
*
4WT8|1|Ab|G|1472
4WT8|1|Ab|U|1473
4WT8|1|Ab|C|1474

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain A2

mRNA

Chain AM

30S ribosomal protein S13

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain C2

Transfer RNA; tRNA