IL_4WT8_069

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

4WT8|1|Bb|G|124, 4WT8|1|Bb|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_069 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.0973

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

4WT8|1|Bb|U|123
4WT8|1|Bb|G|124
4WT8|1|Bb|A|125
4WT8|1|Bb|C|126
*
4WT8|1|Bb|G|227
4WT8|1|Bb|G|228

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BR

30S ribosomal protein S17

Chain BU

30S ribosomal protein S20