IL_4WT8_077

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_077 not in the Motif Atlas

Homologous match to IL_5J7L_018

Geometric discrepancy: 0.124

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4WT8|1|Bb|G|367
4WT8|1|Bb|C|368
4WT8|1|Bb|A|369
4WT8|1|Bb|A|370
4WT8|1|Bb|U|371
*
4WT8|1|Bb|A|385
4WT8|1|Bb|C|386

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BP

30S ribosomal protein S16