IL_4WT8_084

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

4WT8|1|Bb|A|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_084 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0877

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

4WT8|1|Bb|C|553
4WT8|1|Bb|G|554
4WT8|1|Bb|U|555
4WT8|1|Bb|A|556
4WT8|1|Bb|A|557
4WT8|1|Bb|A|558
4WT8|1|Bb|G|559
*
4WT8|1|Bb|C|858
4WT8|1|Bb|G|859

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BE

30S ribosomal protein S5

Chain BL

30S ribosomal protein S12

Chain BR

30S ribosomal protein S17