IL_4WT8_085

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_085 not in the Motif Atlas

Homologous match to IL_6CZR_135

Geometric discrepancy: 0.1204

The information below is about IL_6CZR_135

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4WT8|1|Bb|U|564
4WT8|1|Bb|G|565
4WT8|1|Bb|U|566
4WT8|1|Bb|A|567
4WT8|1|Bb|G|568
*
4WT8|1|Bb|U|741
4WT8|1|Bb|G|742
4WT8|1|Bb|A|743
4WT8|1|Bb|G|744
4WT8|1|Bb|G|745

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BH

30S ribosomal protein S8

Chain BL

30S ribosomal protein S12

Chain BO

30S ribosomal protein S15

Chain BR

30S ribosomal protein S17

Chain D1

Large subunit ribosomal RNA; LSU rRNA