IL_4WT8_093

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4WT8|1|Bb|A|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_093 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1273

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4WT8|1|Bb|G|667
4WT8|1|Bb|A|668
4WT8|1|Bb|G|669
4WT8|1|Bb|U|670
4WT8|1|Bb|A|671
4WT8|1|Bb|G|672
*
4WT8|1|Bb|C|683
4WT8|1|Bb|G|684
4WT8|1|Bb|C|685
4WT8|1|Bb|A|686
4WT8|1|Bb|G|687
4WT8|1|Bb|A|688
4WT8|1|Bb|U|689
4WT8|1|Bb|A|690
4WT8|1|Bb|C|691

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BK

30S ribosomal protein S11

Chain D1

Large subunit ribosomal RNA; LSU rRNA