IL_4WT8_096

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_096 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0731

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4WT8|1|Bb|G|865
4WT8|1|Bb|G|866
4WT8|1|Bb|A|867
4WT8|1|Bb|G|868
4WT8|1|Bb|U|869
4WT8|1|Bb|A|870
4WT8|1|Bb|C|871
4WT8|1|Bb|G|872
*
4WT8|1|Bb|U|883
4WT8|1|Bb|G|884
4WT8|1|Bb|A|885
4WT8|1|Bb|A|886
4WT8|1|Bb|A|887
4WT8|1|Bb|C|888

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BL

30S ribosomal protein S12

Chain BR

30S ribosomal protein S17