IL_4WT8_115

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_115 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1115

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4WT8|1|Bb|G|1384
4WT8|1|Bb|C|1385
4WT8|1|Bb|C|1386
4WT8|1|Bb|C|1387
*
4WT8|1|Bb|G|1475
4WT8|1|Bb|U|1476
4WT8|1|Bb|A|1477
4WT8|1|Bb|A|1478
4WT8|1|Bb|C|1479

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain B2

mRNA

Chain D1

Large subunit ribosomal RNA; LSU rRNA

Chain D4

Transfer RNA; tRNA