IL_4WT8_118

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_118 not in the Motif Atlas

Homologous match to IL_4LFB_059

Geometric discrepancy: 0.08

The information below is about IL_4LFB_059

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4WT8|1|Bb|C|1395
4WT8|1|Bb|A|1396
4WT8|1|Bb|U|1397
*
4WT8|1|Bb|G|1464
4WT8|1|Bb|G|1465
4WT8|1|Bb|G|1466

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BL

30S ribosomal protein S12

Chain D1

Large subunit ribosomal RNA; LSU rRNA