3D structure

PDB id
4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CGGGAG*CAG
Length
9 nucleotides
Bulged bases
4WT8|1|Bb|G|1426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WT8_122 not in the Motif Atlas
Homologous match to IL_4LFB_064
Geometric discrepancy: 0.3625
The information below is about IL_4LFB_064
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_49061.1
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
6

Unit IDs

4WT8|1|Bb|C|1423
4WT8|1|Bb|G|1424
4WT8|1|Bb|G|1425
4WT8|1|Bb|G|1426
4WT8|1|Bb|A|1427
4WT8|1|Bb|G|1428
*
4WT8|1|Bb|C|1437
4WT8|1|Bb|A|1438
4WT8|1|Bb|G|1439

Current chains

Chain Bb
RNA (1504-MER)

Nearby chains

Chain BU
30S ribosomal protein S20
Chain D1
Large subunit ribosomal RNA; LSU rRNA
Chain DS
50S ribosomal protein L19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.7219 s
Application loaded.