IL_4WT8_143

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_143 not in the Motif Atlas

Homologous match to IL_7RQB_021

Geometric discrepancy: 0.0741

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4WT8|1|C1|U|749
4WT8|1|C1|G|750
4WT8|1|C1|A|751
4WT8|1|C1|A|752
4WT8|1|C1|G|753
*
4WT8|1|C1|U|770
4WT8|1|C1|G|771
4WT8|1|C1|G|772
4WT8|1|C1|A|773
4WT8|1|C1|G|774

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CB

50S ribosomal protein L2