IL_4WT8_150

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_150 not in the Motif Atlas

Geometric match to IL_4V9F_034

Geometric discrepancy: 0.0747

The information below is about IL_4V9F_034

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4WT8|1|C1|G|908
4WT8|1|C1|A|909
*
4WT8|1|C1|U|958
4WT8|1|C1|C|959
4WT8|1|C1|C|960

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CP

50S ribosomal protein L16

Chain CZ

50S ribosomal protein L25

Chain Ca

50S ribosomal protein L27

Chain Cs

5S ribosomal RNA; 5S rRNA