IL_4WT8_158

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4WT8|1|C1|C|1040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_158 not in the Motif Atlas

Homologous match to IL_7RQB_035

Geometric discrepancy: 0.101

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4WT8|1|C1|C|1039
4WT8|1|C1|C|1040
4WT8|1|C1|A|1041
*
4WT8|1|C1|U|1204
4WT8|1|C1|G|1205

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CL

50S ribosomal protein L30

Chain CM

50S ribosomal protein L13

Chain CT

50S ribosomal protein L20

Chain CU

50S ribosomal protein L21