IL_4WT8_172

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4WT8|1|C1|A|1424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_172 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0605

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4WT8|1|C1|C|1396
4WT8|1|C1|U|1397
4WT8|1|C1|A|1398
4WT8|1|C1|A|1399
4WT8|1|C1|G|1400
*
4WT8|1|C1|C|1421
4WT8|1|C1|G|1422
4WT8|1|C1|A|1423
4WT8|1|C1|A|1424
4WT8|1|C1|G|1425

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C8

50S ribosomal protein L34

Chain CB

50S ribosomal protein L2