IL_4WT8_190

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_190 not in the Motif Atlas

Homologous match to IL_7RQB_071

Geometric discrepancy: 0.1594

The information below is about IL_7RQB_071

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4WT8|1|C1|C|1867
4WT8|1|C1|C|1868
4WT8|1|C1|G|1869
4WT8|1|C1|G|1870
*
4WT8|1|C1|C|1923
4WT8|1|C1|G|1924

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain Ab

Small subunit ribosomal RNA; SSU rRNA

Chain CB

50S ribosomal protein L2