IL_4WT8_205

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_205 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.1872

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4WT8|1|C1|G|2145
4WT8|1|C1|G|2146
4WT8|1|C1|A|2147
4WT8|1|C1|G|2148
*
4WT8|1|C1|C|2182
4WT8|1|C1|G|2183
4WT8|1|C1|C|2184
4WT8|1|C1|C|2185
4WT8|1|C1|G|2186
4WT8|1|C1|G|2187
4WT8|1|C1|U|2188
4WT8|1|C1|G|2189
4WT8|1|C1|A|2190
4WT8|1|C1|A|2191
4WT8|1|C1|A|2192
4WT8|1|C1|U|2193
4WT8|1|C1|A|2194
4WT8|1|C1|C|2195

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C3

Transfer RNA; tRNA

Chain CA

50S ribosomal protein L1