IL_4WT8_215

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_215 not in the Motif Atlas

Homologous match to IL_7RQB_095

Geometric discrepancy: 0.1933

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4WT8|1|C1|C|2477
4WT8|1|C1|C|2478
4WT8|1|C1|G|2479
4WT8|1|C1|A|2480
4WT8|1|C1|G|2481
*
4WT8|1|C1|C|2491
4WT8|1|C1|G|2492
4WT8|1|C1|G|2493
4WT8|1|C1|C|2494
4WT8|1|C1|G|2495

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C0

50S ribosomal protein L36

Chain C2

Transfer RNA; tRNA

Chain CP

50S ribosomal protein L16