3D structure

PDB id
4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GGAACC*GAAAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WT8_236 not in the Motif Atlas
Homologous match to IL_5J7L_356
Geometric discrepancy: 0.0962
The information below is about IL_5J7L_356
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_18472.4
Basepair signature
cWW-tSW-R-L-R-L-R-cWW
Number of instances in this motif group
3

Unit IDs

4WT8|1|Cs|G|23
4WT8|1|Cs|G|24
4WT8|1|Cs|A|25
4WT8|1|Cs|A|26
4WT8|1|Cs|C|27
4WT8|1|Cs|C|28
*
4WT8|1|Cs|G|56
4WT8|1|Cs|A|57
4WT8|1|Cs|A|58
4WT8|1|Cs|A|59
4WT8|1|Cs|C|60

Current chains

Chain Cs
5S rRNA (119-MER)

Nearby chains

Chain CE
50S ribosomal protein L5
Chain CR
50S ribosomal protein L18

Coloring options:


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