IL_4WT8_267

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_267 not in the Motif Atlas

Homologous match to IL_7RQB_027

Geometric discrepancy: 0.0822

The information below is about IL_7RQB_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.1

Basepair signature

cWW-L-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WT8|1|D1|U|904
4WT8|1|D1|G|905
4WT8|1|D1|U|906
4WT8|1|D1|A|907
4WT8|1|D1|G|908
*
4WT8|1|D1|C|960
4WT8|1|D1|G|961
4WT8|1|D1|A|962
4WT8|1|D1|A|963
4WT8|1|D1|G|964

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DP

50S ribosomal protein L16

Chain Da

50S ribosomal protein L27

Chain Ds

5S ribosomal RNA; 5S rRNA