IL_4WT8_268

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_268 not in the Motif Atlas

Geometric match to IL_7RQB_028

Geometric discrepancy: 0.0802

The information below is about IL_7RQB_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

4WT8|1|D1|G|908
4WT8|1|D1|A|909
*
4WT8|1|D1|U|958
4WT8|1|D1|C|959
4WT8|1|D1|C|960

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DP

50S ribosomal protein L16

Chain DZ

50S ribosomal protein L25

Chain Da

50S ribosomal protein L27

Chain Ds

5S ribosomal RNA; 5S rRNA