IL_4WT8_271
3D structure
- PDB id
- 4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GCU*AAAC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WT8_271 not in the Motif Atlas
- Geometric match to IL_7RQB_031
- Geometric discrepancy: 0.165
- The information below is about IL_7RQB_031
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_46796.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
4WT8|1|D1|G|921
4WT8|1|D1|C|922
4WT8|1|D1|U|923
*
4WT8|1|D1|A|944
4WT8|1|D1|A|945
4WT8|1|D1|A|946
4WT8|1|D1|C|947
Current chains
- Chain D1
- 23S rRNA (2899-MER)
Nearby chains
- Chain D2
- tRNA (5'-D(*AP*UP*CP*CP*CP*CP*GP*UP*GP*UP*CP*CP*UP*UP*GP*GP*UP*UP*CP*G)-3')
- Chain DP
- 50S ribosomal protein L16
- Chain DZ
- 50S ribosomal protein L25
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