IL_4WT8_272

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_272 not in the Motif Atlas

Homologous match to IL_7RQB_032

Geometric discrepancy: 0.16

The information below is about IL_7RQB_032

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_80097.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4WT8|1|D1|U|923
4WT8|1|D1|A|924
4WT8|1|D1|G|925
*
4WT8|1|D1|C|943
4WT8|1|D1|A|944

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain D2

tRNA (5'-D(*AP*UP*CP*CP*CP*CP*GP*UP*GP*UP*CP*CP*UP*UP*GP*GP*UP*UP*CP*G)-3')

Chain DP

50S ribosomal protein L16

Chain DV

Transfer RNA; tRNA

Chain DZ

50S ribosomal protein L25