IL_4WT8_285

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4WT8|1|D1|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_285 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1228

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4WT8|1|D1|C|1252
4WT8|1|D1|G|1253
4WT8|1|D1|A|1254
4WT8|1|D1|U|1255
4WT8|1|D1|G|1256
4WT8|1|D1|A|1257
4WT8|1|D1|A|1258
4WT8|1|D1|G|1259
*
4WT8|1|D1|U|1279
4WT8|1|D1|G|1280
4WT8|1|D1|G|1281
4WT8|1|D1|A|1282
4WT8|1|D1|G|1283

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DT

50S ribosomal protein L20