IL_4WT8_291

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_291 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.2058

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4WT8|1|D1|U|1402
4WT8|1|D1|G|1403
4WT8|1|D1|A|1404
4WT8|1|D1|A|1405
4WT8|1|D1|G|1406
*
4WT8|1|D1|C|1415
4WT8|1|D1|G|1416
4WT8|1|D1|U|1417
4WT8|1|D1|A|1418
4WT8|1|D1|G|1419

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain D8

50S ribosomal protein L34

Chain DB

50S ribosomal protein L2

Chain DH

50S ribosomal protein L28