IL_4WT8_303

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_303 not in the Motif Atlas

Geometric match to IL_7RQB_066

Geometric discrepancy: 0.0649

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4WT8|1|D1|G|1712
4WT8|1|D1|G|1713
4WT8|1|D1|A|1714
4WT8|1|D1|A|1715
*
4WT8|1|D1|U|2014
4WT8|1|D1|C|2015

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DC

50S ribosomal protein L3

Chain DN

50S ribosomal protein L14