IL_4WT8_304

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4WT8|1|D1|G|2013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_304 not in the Motif Atlas

Homologous match to IL_7RQB_067

Geometric discrepancy: 0.0827

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4WT8|1|D1|A|1715
4WT8|1|D1|C|1716
4WT8|1|D1|U|1717
4WT8|1|D1|C|1718
4WT8|1|D1|U|1719
4WT8|1|D1|G|1720
*
4WT8|1|D1|C|2011
4WT8|1|D1|U|2012
4WT8|1|D1|G|2013
4WT8|1|D1|U|2014

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DC

50S ribosomal protein L3

Chain DN

50S ribosomal protein L14