IL_4WT8_312

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_312 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1095

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4WT8|1|D1|G|1886
4WT8|1|D1|G|1887
4WT8|1|D1|G|1888
4WT8|1|D1|A|1889
4WT8|1|D1|G|1890
*
4WT8|1|D1|C|1903
4WT8|1|D1|G|1904
4WT8|1|D1|A|1905
4WT8|1|D1|A|1906
4WT8|1|D1|C|1907

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain D3

Transfer RNA; tRNA

Chain DA

50S ribosomal protein L1

Chain DH

50S ribosomal protein L28