IL_4WT8_318

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

4WT8|1|D1|A|2450

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_318 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.1394

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

4WT8|1|D1|G|2091
4WT8|1|D1|A|2092
*
4WT8|1|D1|U|2449
4WT8|1|D1|A|2450
4WT8|1|D1|C|2451
4WT8|1|D1|C|2452

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain D4

Transfer RNA; tRNA

Chain DB

50S ribosomal protein L2