IL_4WT8_325

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCG*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_325 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.2147

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4WT8|1|D1|C|2160
4WT8|1|D1|C|2161
4WT8|1|D1|G|2162
*
4WT8|1|D1|U|2171
4WT8|1|D1|G|2172
4WT8|1|D1|G|2173

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain Ab

Small subunit ribosomal RNA; SSU rRNA