IL_4WT8_326

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_326 not in the Motif Atlas

Homologous match to IL_7RQB_088

Geometric discrepancy: 0.2364

The information below is about IL_7RQB_088

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4WT8|1|D1|C|2308
4WT8|1|D1|A|2309
4WT8|1|D1|G|2310
*
4WT8|1|D1|C|2328
4WT8|1|D1|G|2329
4WT8|1|D1|G|2330
4WT8|1|D1|A|2331
4WT8|1|D1|G|2332

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DE

50S ribosomal protein L5

Chain DR

50S ribosomal protein L18

Chain Ds

5S ribosomal RNA; 5S rRNA