IL_4WT8_339

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4WT8|1|D1|G|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_339 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.102

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4WT8|1|D1|U|2647
4WT8|1|D1|U|2648
4WT8|1|D1|G|2649
4WT8|1|D1|A|2650
4WT8|1|D1|G|2651
*
4WT8|1|D1|C|2786
4WT8|1|D1|A|2787
4WT8|1|D1|A|2788
4WT8|1|D1|G|2789
4WT8|1|D1|A|2790
4WT8|1|D1|U|2791
4WT8|1|D1|G|2792
4WT8|1|D1|A|2793
4WT8|1|D1|G|2794

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DC

50S ribosomal protein L3

Chain DM

50S ribosomal protein L13