IL_4WT8_340

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_340 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.214

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WT8|1|D1|C|2663
4WT8|1|D1|U|2664
4WT8|1|D1|A|2665
4WT8|1|D1|G|2666
4WT8|1|D1|U|2667
4WT8|1|D1|A|2668
4WT8|1|D1|C|2669
*
4WT8|1|D1|G|2674
4WT8|1|D1|G|2675
4WT8|1|D1|A|2676
4WT8|1|D1|C|2677
4WT8|1|D1|C|2678
4WT8|1|D1|G|2679

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DF

50S ribosomal protein L6