IL_4WT8_342

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4WT8|1|D1|U|2700, 4WT8|1|D1|C|2701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_342 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.1035

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

4WT8|1|D1|U|2698
4WT8|1|D1|U|2699
4WT8|1|D1|U|2700
4WT8|1|D1|C|2701
4WT8|1|D1|C|2702
*
4WT8|1|D1|G|2730
4WT8|1|D1|G|2731
4WT8|1|D1|U|2732
4WT8|1|D1|A|2733
4WT8|1|D1|G|2734

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DC

50S ribosomal protein L3

Chain DQ

50S ribosomal protein L17

Chain DS

50S ribosomal protein L19