IL_4WT8_345

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

4WT8|1|D1|C|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_345 not in the Motif Atlas

Homologous match to IL_7RQB_108

Geometric discrepancy: 0.1297

The information below is about IL_7RQB_108

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4WT8|1|D1|G|2847
4WT8|1|D1|G|2848
*
4WT8|1|D1|U|2887
4WT8|1|D1|C|2888
4WT8|1|D1|C|2889

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DQ

50S ribosomal protein L17

Chain DS

50S ribosomal protein L19