IL_4WT8_347

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_347 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.094

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4WT8|1|D1|U|2856
4WT8|1|D1|G|2857
4WT8|1|D1|U|2858
4WT8|1|D1|A|2859
4WT8|1|D1|A|2860
4WT8|1|D1|G|2861
*
4WT8|1|D1|U|2874
4WT8|1|D1|U|2875
4WT8|1|D1|G|2876
4WT8|1|D1|A|2877
4WT8|1|D1|G|2878

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain Bb

Small subunit ribosomal RNA; SSU rRNA

Chain DQ

50S ribosomal protein L17

Chain DS

50S ribosomal protein L19