IL_4WT8_370

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_370 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0904

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4WT8|1|C1|G|1712
4WT8|1|C1|G|1713
4WT8|1|C1|A|1714
4WT8|1|C1|A|1715
4WT8|1|C1|C|1716
4WT8|1|C1|U|1717
4WT8|1|C1|C|1718
4WT8|1|C1|U|1719
4WT8|1|C1|G|1720
*
4WT8|1|C1|C|2011
4WT8|1|C1|U|2012
4WT8|1|C1|G|2013
4WT8|1|C1|U|2014
4WT8|1|C1|C|2015

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CC

50S ribosomal protein L3

Chain CN

50S ribosomal protein L14