IL_4WT8_380

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_380 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1058

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4WT8|1|Bb|G|445
4WT8|1|Bb|A|446
4WT8|1|Bb|A|447
4WT8|1|Bb|A|448
4WT8|1|Bb|C|449
4WT8|1|Bb|C|450
*
4WT8|1|Bb|G|462
4WT8|1|Bb|A|463
4WT8|1|Bb|C|464
4WT8|1|Bb|U|465
4WT8|1|Bb|G|466
4WT8|1|Bb|A|467
4WT8|1|Bb|C|468

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BP

30S ribosomal protein S16