3D structure

PDB id
4WWW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to CEM-101
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
4WWW|1|QA|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WWW_013 not in the Motif Atlas
Homologous match to IL_5J7L_012
Geometric discrepancy: 0.0955
The information below is about IL_5J7L_012
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.6
Basepair signature
cWW-cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
3

Unit IDs

4WWW|1|QA|G|147
4WWW|1|QA|G|148
4WWW|1|QA|A|149
4WWW|1|QA|U|150
4WWW|1|QA|A|151
4WWW|1|QA|A|152
4WWW|1|QA|C|153
*
4WWW|1|QA|G|168
4WWW|1|QA|C|169
4WWW|1|QA|U|170
4WWW|1|QA|A|171
4WWW|1|QA|A|172
4WWW|1|QA|U|173
4WWW|1|QA|A|174
4WWW|1|QA|C|175

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QT
30S ribosomal protein S20

Coloring options:


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