IL_4WWW_013

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

4WWW|1|QA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_013 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.0955

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

4WWW|1|QA|G|147
4WWW|1|QA|G|148
4WWW|1|QA|A|149
4WWW|1|QA|U|150
4WWW|1|QA|A|151
4WWW|1|QA|A|152
4WWW|1|QA|C|153
*
4WWW|1|QA|G|168
4WWW|1|QA|C|169
4WWW|1|QA|U|170
4WWW|1|QA|A|171
4WWW|1|QA|A|172
4WWW|1|QA|U|173
4WWW|1|QA|A|174
4WWW|1|QA|C|175

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20