IL_4WWW_051

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGCAU*AUGG

Length

10 nucleotides

Bulged bases

4WWW|1|QA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_051 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.3166

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4WWW|1|QA|C|1051
4WWW|1|QA|U|1052
4WWW|1|QA|G|1053
4WWW|1|QA|C|1054
4WWW|1|QA|A|1055
4WWW|1|QA|U|1056
*
4WWW|1|QA|A|1204
4WWW|1|QA|U|1205
4WWW|1|QA|G|1206
4WWW|1|QA|G|1207

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QJ

30S ribosomal protein S10

Chain QN

30S ribosomal protein S14