IL_4WWW_098

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_098 not in the Motif Atlas

Homologous match to IL_5J7L_272

Geometric discrepancy: 0.0594

The information below is about IL_5J7L_272

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4WWW|1|RA|G|864
4WWW|1|RA|C|865
4WWW|1|RA|A|866
4WWW|1|RA|C|867
4WWW|1|RA|U|868
*
4WWW|1|RA|A|909
4WWW|1|RA|A|910
4WWW|1|RA|A|911
4WWW|1|RA|C|912

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RB

5S ribosomal RNA; 5S rRNA

Chain RM

50S ribosomal protein L16