IL_4WWW_114

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4WWW|1|RA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_114 not in the Motif Atlas

Homologous match to IL_5J7L_286

Geometric discrepancy: 0.0734

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

4WWW|1|RA|C|1196
4WWW|1|RA|G|1197
4WWW|1|RA|U|1198
*
4WWW|1|RA|A|1247
4WWW|1|RA|G|1248
4WWW|1|RA|U|1249
4WWW|1|RA|G|1250

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L4

Chain RL

50S ribosomal protein L15

Chain RQ

50S ribosomal protein L20