IL_4WWW_164

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_164 not in the Motif Atlas

Geometric match to IL_7A0S_086

Geometric discrepancy: 0.3222

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

4WWW|1|RA|A|2459
4WWW|1|RA|U|2460
4WWW|1|RA|A|2461
*
4WWW|1|RA|U|2489
4WWW|1|RA|G|2490
4WWW|1|RA|U|2491
4WWW|1|RA|U|2492
4WWW|1|RA|U|2493

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RM

50S ribosomal protein L16