IL_4WWW_225

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

4WWW|1|XA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_225 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1031

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4WWW|1|XA|U|662
4WWW|1|XA|A|663
4WWW|1|XA|G|664
4WWW|1|XA|A|665
4WWW|1|XA|G|666
*
4WWW|1|XA|U|740
4WWW|1|XA|G|741
4WWW|1|XA|G|742
4WWW|1|XA|A|743

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XF

30S ribosomal protein S6

Chain XO

30S ribosomal protein S15

Chain XR

30S ribosomal protein S18